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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1d8f SPI Stromelysin-1 3.4.24.17

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1d8f SPIStromelysin-1 3.4.24.17 0.938
1d8m BBHStromelysin-1 3.4.24.17 0.846
3oho Z79Stromelysin-1 3.4.24.17 0.792
2ow1 7MRMatrix metalloproteinase-9 3.4.24.35 0.782
4dpe NGHStromelysin-1 3.4.24.17 0.781
4ja1 NGHStromelysin-1 3.4.24.17 0.773
1bqo N25Stromelysin-1 3.4.24.17 0.766
1d7x SPCStromelysin-1 3.4.24.17 0.764
4g9l NGHStromelysin-1 3.4.24.17 0.759
1b3d S27Stromelysin-1 3.4.24.17 0.746
2w0d CGSMacrophage metalloelastase 3.4.24.65 0.739
2i47 KGYDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.736
3o2x 3O2Collagenase 3 3.4.24 0.724
1g49 111Stromelysin-1 3.4.24.17 0.716
3kry 3KRCollagenase 3 3.4.24 0.714
1bzs BSINeutrophil collagenase 3.4.24.34 0.711
1g05 BBHStromelysin-1 3.4.24.17 0.710
1d5j MM3Stromelysin-1 3.4.24.17 0.694
1ciz DPSStromelysin-1 3.4.24.17 0.690
1hy7 MBSStromelysin-1 3.4.24.17 0.674
1q3a NGHStromelysin-2 3.4.24.22 0.674
2d1o FA4Stromelysin-1 3.4.24.17 0.673
2yig 5ELCollagenase 3 3.4.24 0.668
2ow2 8MRMatrix metalloproteinase-9 3.4.24.35 0.667
1fm1 WAYCollagenase 3 3.4.24 0.665
1you PFDCollagenase 3 3.4.24 0.665
4i03 L88Macrophage metalloelastase 3.4.24.65 0.660
2i47 INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.659
1g4k HQQStromelysin-1 3.4.24.17 0.655
1fls WAYCollagenase 3 3.4.24 0.654
3hy7 097A disintegrin and metalloproteinase with thrombospondin motifs 5 3.4.24 0.651