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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1d5j MM3 Stromelysin-1 3.4.24.17

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1d5j MM3Stromelysin-1 3.4.24.17 1.033
4dpe NGHStromelysin-1 3.4.24.17 0.815
1g49 111Stromelysin-1 3.4.24.17 0.750
1d7x SPCStromelysin-1 3.4.24.17 0.727
4ja1 NGHStromelysin-1 3.4.24.17 0.722
1bqo N25Stromelysin-1 3.4.24.17 0.712
2ow1 7MRMatrix metalloproteinase-9 3.4.24.35 0.710
1d8f SPIStromelysin-1 3.4.24.17 0.694
1d8m BBHStromelysin-1 3.4.24.17 0.691
1b3d S27Stromelysin-1 3.4.24.17 0.687
3oho Z79Stromelysin-1 3.4.24.17 0.685
2a8h 4NHDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.678
3zxh E41Collagenase 3 3.4.24 0.677
2yig 5ELCollagenase 3 3.4.24 0.674
4h30 0ZDMacrophage metalloelastase 3.4.24.65 0.662
2ovx 4MRMatrix metalloproteinase-9 3.4.24.35 0.661
1zs0 EINNeutrophil collagenase 3.4.24.34 0.657
1you PFDCollagenase 3 3.4.24 0.656
3o2x 3O2Collagenase 3 3.4.24 0.654
1g05 BBHStromelysin-1 3.4.24.17 0.653
3kry 3KRCollagenase 3 3.4.24 0.653
4g9l NGHStromelysin-1 3.4.24.17 0.653