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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1d4y TPV Gag-Pol polyprotein 3.4.23.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1d4y TPVGag-Pol polyprotein 3.4.23.16 1.146
2o4p TPVProtease / 0.969
4nju TPVProtease / 0.941
1d4s TPVGag-Pol polyprotein 3.4.23.16 0.816
2upj U02Gag-Pol polyprotein 3.4.23.16 0.736
1meu DMPGag-Pol polyprotein 3.4.23.16 0.720
1ec1 BEEGag-Pol polyprotein 3.4.23.16 0.715
1bwb 146Gag-Pol polyprotein 3.4.23.16 0.702
1ec2 BEJGag-Pol polyprotein 3.4.23.16 0.698
3i2l 2NCProtease / 0.698
2p3d 3TLProtease / 0.694
1ajx AH1Gag-Pol polyprotein 3.4.23.16 0.687
4gb2 0LQGag-Pol polyprotein 2.7.7.49 0.680
1ec3 MS3Gag-Pol polyprotein 3.4.23.16 0.672
1qbr XV6Gag-Pol polyprotein 3.4.23.16 0.672
1met DMPGag-Pol polyprotein 3.4.23.16 0.666
1k1u 0Q4Gag-Pol polyprotein 3.4.23.16 0.659
3nwx KVSGag-Pol polyprotein 3.4.23.16 0.658
1fff 0Q4Gag-Pol polyprotein 3.4.23.16 0.657
1b6m PI6Gag-Pol polyprotein 3.4.23.16 0.656
1ebw BEIGag-Pol polyprotein 3.4.23.16 0.656
2p3a 3TLPol protein / 0.656
3em6 017Gag-Pol polyprotein 3.4.23.16 0.656
1mrx K57Gag-Pol polyprotein 3.4.23.16 0.655
3kfs 3TLGag-Pol polyprotein / 0.655
1b6p PI7Gag-Pol polyprotein 3.4.23.16 0.654
3oxx DR7Gag-Pol polyprotein 3.4.23.16 0.652