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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1d4s TPV Gag-Pol polyprotein 3.4.23.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1d4s TPVGag-Pol polyprotein 3.4.23.16 1.202
1d4y TPVGag-Pol polyprotein 3.4.23.16 0.816
4nju TPVProtease / 0.767
2upj U02Gag-Pol polyprotein 3.4.23.16 0.731
2o4p TPVProtease / 0.670
1bwb 146Gag-Pol polyprotein 3.4.23.16 0.663
1k2c 0Q4Gag-Pol polyprotein 3.4.23.16 0.660
1pro A88Gag-Pol polyprotein / 0.654
1fgc 2NCGag-Pol polyprotein 3.4.23.16 0.651
1meu DMPGag-Pol polyprotein 3.4.23.16 0.651