Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1cul FOK Adenylate cyclase type 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1cul FOKAdenylate cyclase type 2 / 0.989
1cul FOKAdenylate cyclase type 5 / 0.989
1cs4 FOKAdenylate cyclase type 2 / 0.965
1cs4 FOKAdenylate cyclase type 5 / 0.965
1cjt FOKAdenylate cyclase type 2 / 0.962
1cjt FOKAdenylate cyclase type 5 / 0.962
1cjv FOKAdenylate cyclase type 2 / 0.945
1cjv FOKAdenylate cyclase type 5 / 0.945
1cju FOKAdenylate cyclase type 2 / 0.912
1cju FOKAdenylate cyclase type 5 / 0.912
3c15 FOKAdenylate cyclase type 2 / 0.908
3c15 FOKAdenylate cyclase type 5 / 0.908
1cjk FOKAdenylate cyclase type 2 / 0.883
1cjk FOKAdenylate cyclase type 5 / 0.883
3maa FKPAdenylate cyclase type 2 / 0.873
3maa FKPAdenylate cyclase type 5 / 0.873
3c16 FOKAdenylate cyclase type 2 / 0.858
3c16 FOKAdenylate cyclase type 5 / 0.858
1u0h FOKAdenylate cyclase type 2 / 0.843
1u0h FOKAdenylate cyclase type 5 / 0.843
2gvd FKPAdenylate cyclase type 2 / 0.806
2gvd FKPAdenylate cyclase type 5 / 0.806
1tl7 FOKAdenylate cyclase type 2 / 0.797
1tl7 FOKAdenylate cyclase type 5 / 0.797
3c14 FOKAdenylate cyclase type 2 / 0.745
3c14 FOKAdenylate cyclase type 5 / 0.745