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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1cq6 PY4 Aspartate aminotransferase 2.6.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1cq6 PY4Aspartate aminotransferase 2.6.1.1 1.108
1cq7 PY5Aspartate aminotransferase 2.6.1.1 0.907
1cq8 PY6Aspartate aminotransferase 2.6.1.1 0.891
1akb PPDAspartate aminotransferase, mitochondrial 2.6.1.1 0.883
1arg PPDAspartate aminotransferase 2.6.1.1 0.852
1arh PPDAspartate aminotransferase 2.6.1.1 0.835
1ahg TYR_PLPAspartate aminotransferase 2.6.1.1 0.827
1oxo IK2Aspartate aminotransferase, mitochondrial 2.6.1.1 0.824
4gdy 0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.804
1x28 PGUAspartate aminotransferase 2.6.1.1 0.797
3ele PLPAminotransferase / 0.782
1aka PLPAspartate aminotransferase, mitochondrial 2.6.1.1 0.780
1maq PGUAspartate aminotransferase, mitochondrial 2.6.1.1 0.778
1akc PPEAspartate aminotransferase, mitochondrial 2.6.1.1 0.764
3qpg 3QPAspartate aminotransferase 2.6.1.1 0.728
4w5k PLPAspartate aminotransferase, mitochondrial / 0.723
4itx IN5Cystathionine beta-lyase MetC 4.4.1.8 0.708
4rkd KETAminotransferase / 0.707
4dbc 3QPAspartate aminotransferase 2.6.1.1 0.705
1cl2 PPGCystathionine beta-lyase MetC 4.4.1.8 0.696
1map KETAspartate aminotransferase, mitochondrial 2.6.1.1 0.681
1asc NPLAspartate aminotransferase 2.6.1.1 0.678
4hh4 SAHCcbJ / 0.677
4emy PLPAminotransferase class I and II / 0.673
4ge9 0L0Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.673
4d96 5PAD-cysteine desulfhydrase / 0.672
1ivr CBAAspartate aminotransferase, mitochondrial 2.6.1.1 0.670
4wxf PLGSerine hydroxymethyltransferase / 0.665
1toj HCIAspartate aminotransferase 2.6.1.1 0.664
4fl0 PLPAminotransferase ALD1, chloroplastic 2.6.1 0.663
4ge7 0K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.660
4je5 PLPAromatic/aminoadipate aminotransferase 1 2.6.1.39 0.660
1u08 PLPMethionine aminotransferase / 0.657
3ngl NAPBifunctional protein FolD / 0.657
5dxj SFGHistone-arginine methyltransferase CARM1 / 0.657
1dfo PLGSerine hydroxymethyltransferase 2.1.2.1 0.655
2c97 JCL6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.655
4wlj IK2Kynurenine--oxoglutarate transaminase 1 2.6.1.7 0.653
1j0d 5PA1-aminocyclopropane-1-carboxylate deaminase 3.5.99.7 0.651
1xvv CCQL-carnitine CoA-transferase / 0.651