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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1coy AND Cholesterol oxidase 1.1.3.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1coy ANDCholesterol oxidase 1.1.3.6 1.099
1t7t DHTAndrogen receptor / 0.698
1y5r C0RCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.698
4ofu DHTAndrogen receptor / 0.697
4ofr DHTAndrogen receptor / 0.693
2piv DHTAndrogen receptor / 0.688
2piu DHTAndrogen receptor / 0.687
3oll ESTEstrogen receptor beta / 0.685
4oey DHTAndrogen receptor / 0.679
1lho AOMSex hormone-binding globulin / 0.678
1zhy CLROxysterol-binding protein homolog 4 / 0.676
2ylp TESAndrogen receptor / 0.672
1jtv TESEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.668
1lhn AONSex hormone-binding globulin / 0.667
1q20 PLOSulfotransferase family cytosolic 2B member 1 2.8.2.2 0.664
3qru X19Cyclin-dependent kinase 2 2.7.11.22 0.660
1t5z DHTAndrogen receptor / 0.657
1ya3 STRMineralocorticoid receptor / 0.657
3nbr ASDSteroid Delta-isomerase 5.3.3.1 0.654
2q7i TESAndrogen receptor / 0.652
1t7r DHTAndrogen receptor / 0.651