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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1cnf FAD Nitrate reductase [NADH] 1.7.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1cnf FADNitrate reductase [NADH] 1.7.1.1 1.151
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.833
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.798
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.764
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.743
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.729
2eix FADNADH-cytochrome b5 reductase / 0.708
2qdx FADFerredoxin--NADP+ reductase / 0.703
2vnj FADNADPH:ferredoxin reductase / 0.699
4fk8 FADFerredoxin--NADP reductase / 0.697
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.694
4b4d FADFerredoxin-NADP reductase / 0.694
2vnk FADNADPH:ferredoxin reductase / 0.693
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.690
1cqx FADFlavohemoprotein / 0.688
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.680
1j9z FADNADPH--cytochrome P450 reductase / 0.678
1cne FADNitrate reductase [NADH] 1.7.1.1 0.677
1go2 FADFerredoxin--NADP reductase 1.18.1.2 0.677
1amo FADNADPH--cytochrome P450 reductase / 0.676
3crz FADFerredoxin--NADP+ reductase / 0.676
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.672
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.672
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.672
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.669
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.668
3ojw FADNADPH--cytochrome P450 reductase / 0.667
2bgj FADNADPH:ferredoxin reductase / 0.666
3fpk FADFerredoxin-NADP reductase / 0.666
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.665
2iml FMNUncharacterized protein / 0.665
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.663
4k1x FADNADPH:ferredoxin reductase / 0.663
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.662
2rc6 FADFerredoxin--NADP reductase / 0.660
2bn4 FADNADPH--cytochrome P450 reductase / 0.659
4yaf FADNADPH--cytochrome P450 reductase / 0.658
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.657
1gvh FADFlavohemoprotein / 0.656
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.654
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.652
2vnh FADNADPH:ferredoxin reductase / 0.652
1e63 FADFerredoxin--NADP reductase 1.18.1.2 0.651
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.651
1que FADFerredoxin--NADP reductase 1.18.1.2 0.650
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.650