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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1cne FAD Nitrate reductase [NADH] 1.7.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1cne FADNitrate reductase [NADH] 1.7.1.1 1.175
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.682
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.677
2qdx FADFerredoxin--NADP+ reductase / 0.657
2vnh FADNADPH:ferredoxin reductase / 0.656
4b4d FADFerredoxin-NADP reductase / 0.650