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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1cil ETS Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.881
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.817
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.812
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.803
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.802
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.777
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.777
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.759
4uov AZMCarbonate dehydratase / 0.758
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.755
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.753
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.748
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.729
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.726
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.724
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.723
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.721
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.720
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.718
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.718
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.718
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.717
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.716
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.716
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.716
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.715
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.715
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.715
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.715
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.713
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.713
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.713
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.712
4xiw AZMCarbonic anhydrase, alpha type / 0.711
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.708
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.708
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.707
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.706
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.705
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.705
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.704
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.704
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.704
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.704
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.703
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.703
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.701
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.701
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.700
1bzm MZMCarbonic anhydrase 1 4.2.1.1 0.699
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.699
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.699
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.698
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.697
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.695
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.695
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.694
3sax E50Carbonic anhydrase 2 4.2.1.1 0.693
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.693
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.692
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.692
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.692
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.690
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.687
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.686
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.685
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.683
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.682
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.681
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.681
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.680
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.679
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.679
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.678
1okn STBCarbonic anhydrase 2 4.2.1.1 0.676
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.675
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.675
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.673
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.670
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.670
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.670
4ht2 V50Carbonic anhydrase 12 4.2.1.1 0.670
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.668
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.668
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.667
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.667
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.667
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.666
3mho J43Carbonic anhydrase 2 4.2.1.1 0.665
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.664
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.661
1okm SABCarbonic anhydrase 2 4.2.1.1 0.658
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.657
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.657
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.656
2h15 B19Carbonic anhydrase 2 4.2.1.1 0.656
4knn E1FCarbonic anhydrase 13 4.2.1.1 0.656
2eu3 FF3Carbonic anhydrase 2 4.2.1.1 0.655
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.654
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.654
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.651
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.650
3hku TORCarbonic anhydrase 2 4.2.1.1 0.650
3m2y BE0Carbonic anhydrase 2 4.2.1.1 0.650