Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1caq DPS Stromelysin-1 3.4.24.17

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1caq DPSStromelysin-1 3.4.24.17 1.038
1ciz DPSStromelysin-1 3.4.24.17 0.902
1b8y IN7Stromelysin-1 3.4.24.17 0.861
1zvx FINNeutrophil collagenase 3.4.24.34 0.728
1bzs BSINeutrophil collagenase 3.4.24.34 0.695
4h1q 0XXMatrix metalloproteinase-9 3.4.24.35 0.680
4i03 L88Macrophage metalloelastase 3.4.24.65 0.680
1d7x SPCStromelysin-1 3.4.24.17 0.653
4g9l NGHStromelysin-1 3.4.24.17 0.650