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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1c9h RAP Peptidyl-prolyl cis-trans isomerase FKBP1B 5.2.1.8

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1c9h RAPPeptidyl-prolyl cis-trans isomerase FKBP1B 5.2.1.8 1.109
1fkb RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.072
2dg4 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.067
2dg3 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.029
1fkl RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.005
1nsg RADPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.986
1nsg RADSerine/threonine-protein kinase mTOR 2.7.11.1 0.986
2fap RADPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.986
2fap RADSerine/threonine-protein kinase mTOR 2.7.11.1 0.986
2dg9 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.970
4qt3 RAPPeptidylprolyl isomerase / 0.954
1fap RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.940
1fap RAPSerine/threonine-protein kinase mTOR 2.7.11.1 0.940
4fap ARDPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.914
4fap ARDSerine/threonine-protein kinase mTOR 2.7.11.1 0.914
2fke FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.839
1bkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.828
1fkj FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.810
4dz2 FK5Peptidyl-prolyl cis-trans isomerase / 0.806
1fkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.799
1tco FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.794
1tco FK5Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform 3.1.3.16 0.794
2vn1 FK5Peptidylprolyl isomerase / 0.784
1fkg SB3Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.775
1qpf 858Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.755
3ihz FK5Peptidylprolyl isomerase / 0.754
1qpl 587Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.753
4dh0 MR8Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.747
4odo FK5Peptidyl-prolyl cis-trans isomerase / 0.738
3o5r FK5Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.731
1q6i FK5FKBP-type peptidyl-prolyl cis-trans isomerase FkpA 5.2.1.8 0.730
4lay I63Peptidyl-prolyl cis-trans isomerase FKBP4 5.2.1.8 0.729
1fki SB1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.724
4dri RAPSerine/threonine-protein kinase mTOR 2.7.11.1 0.720
4dri RAPPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.720
4drm 0MCPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.698
4drh RAPSerine/threonine-protein kinase mTOR 2.7.11.1 0.693
4drh RAPPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.693
4drj RAPSerine/threonine-protein kinase mTOR 2.7.11.1 0.690
4drj RAPPeptidyl-prolyl cis-trans isomerase FKBP4 5.2.1.8 0.690
1a7x FKAPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.680
4dro 0MDPeptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.652