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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1c8t TR1 Stromelysin-1 3.4.24.17

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1c8t TR1Stromelysin-1 3.4.24.17 1.079
3ljg EEFMacrophage metalloelastase 3.4.24.65 0.766
4gr8 R4CMacrophage metalloelastase 3.4.24.65 0.698
3tsk QEGMacrophage metalloelastase 3.4.24.65 0.691
4gr3 R45Macrophage metalloelastase 3.4.24.65 0.677
3lik EEGMacrophage metalloelastase 3.4.24.65 0.671
2woa 576Macrophage metalloelastase 3.4.24.65 0.667
2wo8 077Macrophage metalloelastase 3.4.24.65 0.665
1hy7 MBSStromelysin-1 3.4.24.17 0.654
1biw S80Stromelysin-1 3.4.24.17 0.652
2hu6 37AMacrophage metalloelastase 3.4.24.65 0.650