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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1c1w BAH Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1c1w BAHProthrombin 3.4.21.5 0.974
1c1u BAIProthrombin 3.4.21.5 0.855
1ghv 120Prothrombin 3.4.21.5 0.735
1o5g CR9Prothrombin 3.4.21.5 0.712
1c5n ESIProthrombin 3.4.21.5 0.704
1o2g 696Prothrombin 3.4.21.5 0.697
3biv 11UProthrombin 3.4.21.5 0.694
3v0x ANHCationic trypsin 3.4.21.4 0.689
1owe 675Urokinase-type plasminogen activator 3.4.21.73 0.683
1gj4 132Prothrombin 3.4.21.5 0.673
1ny2 ARG_PRO_PRO_GLYProthrombin 3.4.21.5 0.671
4fud 6UPUrokinase-type plasminogen activator 3.4.21.73 0.668
1zsk 421Coagulation factor XI 3.4.21.27 0.667
2gde SN3Prothrombin 3.4.21.5 0.664
2zfr 46UProthrombin 3.4.21.5 0.664
1gj5 130Prothrombin 3.4.21.5 0.663
2ziq 26UProthrombin 3.4.21.5 0.663
1drt PCVClavaminate synthase 1 1.14.11.21 0.660
1owd 497Urokinase-type plasminogen activator 3.4.21.73 0.660
1u6q 745Urokinase-type plasminogen activator 3.4.21.73 0.658
3utu 1TSProthrombin 3.4.21.5 0.656
4bak M67Prothrombin 3.4.21.5 0.656
2zhf 49UProthrombin 3.4.21.5 0.653
1owi 426Urokinase-type plasminogen activator 3.4.21.73 0.652
4baq M4ZProthrombin 3.4.21.5 0.651
2v3h I25Prothrombin 3.4.21.5 0.650