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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1bxr ANP Carbamoyl-phosphate synthase large chain

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1bxr ANPCarbamoyl-phosphate synthase large chain / 1.246
1a9x ADPCarbamoyl-phosphate synthase large chain / 0.781
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.710
2pz5 ACPFibroblast growth factor receptor 2 / 0.682
2fju GSPRas-related C3 botulinum toxin substrate 1 / 0.679
3eth ATPN5-carboxyaminoimidazole ribonucleotide synthase / 0.678
4mkf AP5Adenylate kinase / 0.678
4ii5 ADPCyclin-dependent kinase 2 2.7.11.22 0.677
2xan ANPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.676
2qcs ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.675
3fhi ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.672
5da9 AGSUncharacterized protein / 0.671
1bmf ADPATP synthase subunit alpha, mitochondrial / 0.662
1bmf ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.662
4xjx ATPType I restriction enzyme EcoR124II R protein 3.1.21.3 0.660
5c1p ADPD-alanine--D-alanine ligase / 0.659
5ce3 ADPProtein kinase YopO / 0.658
4bw9 ANPPyrrolysine--tRNA ligase / 0.657
1e1q ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.656
1h8h ATPATP synthase subunit alpha, mitochondrial / 0.656
1h8h ATPATP synthase subunit beta, mitochondrial 3.6.3.14 0.656
4oa9 ANPProtein BRASSINOSTEROID INSENSITIVE 1 2.7.10.1 0.656
4w5j AP5Adenylate kinase / 0.656
2oap ANPType II secretion system protein (GspE-2) / 0.655
1h8h ADPATP synthase subunit alpha, mitochondrial / 0.653
1h8h ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.653
4tlb AGSCircadian clock protein kinase KaiC 2.7.11.1 0.653
4tld AGSCircadian clock protein kinase KaiC 2.7.11.1 0.653
1ndc TYDNucleoside diphosphate kinase, cytosolic 2.7.4.6 0.652
3ukf GDUUDP-galactopyranose mutase / 0.651
4bzc T8TDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.651
4lv7 ADPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.651
5la6 ACPTubulin tyrosine ligase / 0.651