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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1bx0 FAD Ferredoxin--NADP reductase, chloroplastic 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.327
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.306
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.266
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.260
1gaw FADFerredoxin / 1.245
1que FADFerredoxin--NADP reductase 1.18.1.2 1.240
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.229
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.226
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.223
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.220
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.215
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.210
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.204
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.199
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.196
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.190
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.181
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.177
3vo2 FADFerredoxin--NADP reductase / 1.177
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.172
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.164
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.164
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.158
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.156
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.150
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.147
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.144
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.138
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.126
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.122
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.116
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.095
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.093
2rc6 FADFerredoxin--NADP reductase / 1.088
3w5u FADFerredoxin / 1.070
1sm4 FADFerredoxin--NADP reductase / 1.062
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.052
2rc5 FADFerredoxin--NADP reductase / 1.038
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.997
1gaq FADFerredoxin / 0.997
3qfs FADNADPH--cytochrome P450 reductase / 0.963
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.951
4y7c FADNADPH--cytochrome P450 reductase / 0.949
1ja1 FADNADPH--cytochrome P450 reductase / 0.936
4yau FADNADPH--cytochrome P450 reductase / 0.934
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.933
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.929
1tll FADNitric oxide synthase, brain 1.14.13.39 0.926
1ja0 FADNADPH--cytochrome P450 reductase / 0.924
3ojw FADNADPH--cytochrome P450 reductase / 0.922
4y9u FADNADPH--cytochrome P450 reductase / 0.922
3qfr FADNADPH--cytochrome P450 reductase / 0.918
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.913
3qft FADNADPH--cytochrome P450 reductase / 0.912
4yaf FADNADPH--cytochrome P450 reductase / 0.909
3qe2 FADNADPH--cytochrome P450 reductase / 0.904
4y9r FADNADPH--cytochrome P450 reductase / 0.901
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.891
1j9z FADNADPH--cytochrome P450 reductase / 0.891
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.888
3qfc FADNADPH--cytochrome P450 reductase / 0.883
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.882
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.873
4yao FADNADPH--cytochrome P450 reductase / 0.862
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.858
2bf4 FADNADPH--cytochrome P450 reductase / 0.852
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.837
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.832
1amo FADNADPH--cytochrome P450 reductase / 0.824
3ojx FADNADPH--cytochrome P450 reductase / 0.824
2eix FADNADH-cytochrome b5 reductase / 0.812
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.803
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.798
1cqx FADFlavohemoprotein / 0.795
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.790
3fpk FADFerredoxin-NADP reductase / 0.789
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.785
2pia FMNPhthalate dioxygenase reductase / 0.768
1gvh FADFlavohemoprotein / 0.761
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.749
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.749
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.745
2gpj FADSiderophore-interacting protein / 0.742
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.732
4k1x FADNADPH:ferredoxin reductase / 0.719
1ib0 FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.707
2bn4 FADNADPH--cytochrome P450 reductase / 0.706
2ptf FMNUncharacterized protein MTH_863 / 0.695
3in6 FMNUncharacterized protein / 0.694
3pl8 FADPyranose 2-oxidase / 0.693
3a20 FMNFMN-binding protein / 0.692
2bgi FADNADPH:ferredoxin reductase / 0.690
4fk8 FADFerredoxin--NADP reductase / 0.690
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.684
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.682
3e4v FMNUncharacterized protein / 0.682
3v76 FDAUncharacterized protein / 0.676
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.674
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.673
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.673
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.673
5j60 FADThioredoxin reductase / 0.673
3hdy FDAUDP-galactopyranose mutase / 0.672
3pft FMNFlavin reductase / 0.672
3r5y F42Uncharacterized protein / 0.670
2yg6 FADPutrescine oxidase / 0.667
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.664
3a6r FMNFMN-binding protein / 0.662
3a6q FMNFMN-binding protein / 0.661
3vy2 FMNFMN-binding protein / 0.661
2vnk FADNADPH:ferredoxin reductase / 0.659
5g3s FDAFlavin-dependent L-tryptophan oxidase VioA / 0.659
3k4c FADPyranose 2-oxidase / 0.657
2bgj FADNADPH:ferredoxin reductase / 0.656
2vnh FADNADPH:ferredoxin reductase / 0.656
4hsu FADLysine-specific histone demethylase 1B 1 0.656
3lsm SFDPyranose 2-oxidase / 0.655
3lov FADProtoporphyrinogen oxidase / 0.653
4l82 FMNUncharacterized protein / 0.652
2qdx FADFerredoxin--NADP+ reductase / 0.651
1knr FADL-aspartate oxidase 1.4.3.16 0.650
4ybn FADFlavin-nucleotide-binding protein / 0.650