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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1bu5 RBF Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1bu5 RBFFlavodoxin / 0.862
1c7f FMNFlavodoxin / 0.766
1azl FMNFlavodoxin / 0.749
1akw FMNFlavodoxin / 0.734
2bf4 FMNNADPH--cytochrome P450 reductase / 0.726
3f6r FMNFlavodoxin / 0.719
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.713
3qe2 FMNNADPH--cytochrome P450 reductase / 0.712
3f6s FMNFlavodoxin / 0.710
4y7c FMNNADPH--cytochrome P450 reductase / 0.704
1fue FMNFlavodoxin / 0.702
1xyv FMNFlavodoxin / 0.702
4yao FMNNADPH--cytochrome P450 reductase / 0.700
1akr FMNFlavodoxin / 0.698
1xyy FMNFlavodoxin / 0.698
2v5u FMNFlavodoxin / 0.698
4oxx FMNCindoxin / 0.698
3qfr FMNNADPH--cytochrome P450 reductase / 0.696
5xra FMNCannabinoid receptor 1 / 0.694
1j9g FMNFlavodoxin / 0.692
2bn4 FMNNADPH--cytochrome P450 reductase / 0.689
3ojx FMNNADPH--cytochrome P450 reductase / 0.688
1ja0 FMNNADPH--cytochrome P450 reductase / 0.685
2fx2 FMNFlavodoxin / 0.683
3ojw FMNNADPH--cytochrome P450 reductase / 0.681
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.678
4bmo FMNProtein NrdI / 0.677
4bmp FMNProtein NrdI / 0.675
1aku FMNFlavodoxin / 0.674
1amo FMNNADPH--cytochrome P450 reductase / 0.674
2fcr FMNFlavodoxin / 0.674
5tgz FMNCannabinoid receptor 1 / 0.674
3esz FMNFlavodoxin / 0.671
3kap FMNFlavodoxin / 0.669
1wsb FMNFlavodoxin / 0.667
1ahn FMNFlavodoxin 1 / 0.662
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.662
1j9z FMNNADPH--cytochrome P450 reductase / 0.660
1j8q FMNFlavodoxin / 0.658
3f90 FMNFlavodoxin / 0.656
2v5v FMNFlavodoxin / 0.653
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.652
3esy FMNFlavodoxin / 0.651
4fx2 FMNFlavodoxin / 0.651
1czn FMNFlavodoxin / 0.650
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.650
1ofv FMNFlavodoxin / 0.650