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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1bnn AL1 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.867
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.787
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.783
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.776
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.768
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.754
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.752
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.744
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.743
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.740
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.736
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.735
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.733
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.730
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.728
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.728
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.728
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.725
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.725
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.724
4uov AZMCarbonate dehydratase / 0.724
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.721
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.718
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.717
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.716
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.716
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.715
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.714
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.714
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.713
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.710
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.709
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.707
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.705
3mho J43Carbonic anhydrase 2 4.2.1.1 0.705
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.705
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.705
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.704
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.704
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.704
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.703
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.702
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.701
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.700
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.699
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.697
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.695
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.695
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.693
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.693
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.693
1okm SABCarbonic anhydrase 2 4.2.1.1 0.692
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.691
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.691
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.690
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.688
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.688
3sax E50Carbonic anhydrase 2 4.2.1.1 0.687
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.686
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.684
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.683
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.683
4xiw AZMCarbonic anhydrase, alpha type / 0.682
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.681
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.680
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.679
1g4j FFBCarbonic anhydrase 2 4.2.1.1 0.678
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.676
1bzm MZMCarbonic anhydrase 1 4.2.1.1 0.675
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.675
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.674
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.674
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.672
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.671
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.671
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.670
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.667
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.665
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.665
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.664
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.663
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.661
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.661
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.659
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.655
3lxe TORCarbonic anhydrase 1 4.2.1.1 0.655
1okn STBCarbonic anhydrase 2 4.2.1.1 0.654
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.654
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.652
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.651
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.651