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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1bim 0QB Renin 3.4.23.15

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1bim 0QBRenin 3.4.23.15 1.313
1bil 0IURenin 3.4.23.15 0.920
2g20 L1ARenin 3.4.23.15 0.831
2jjj 0QSEndothiapepsin 3.4.23.22 0.753
1gvt 2ZSEndothiapepsin 3.4.23.22 0.741
1eag A70Candidapepsin-2 3.4.23.24 0.739
1od1 0QSEndothiapepsin 3.4.23.22 0.722
2jji 0QSEndothiapepsin 3.4.23.22 0.721
1e80 0GQEndothiapepsin 3.4.23.22 0.695
3own 3OXRenin 3.4.23.15 0.687
1gvv 0GMEndothiapepsin 3.4.23.22 0.671
3ixk 929Beta-secretase 1 3.4.23.46 0.666
1qrp HH0Pepsin A-4 3.4.23.1 0.665
1t3r 017Gag-Pol polyprotein 3.4.23.16 0.659
1rne C60Renin 3.4.23.15 0.655
3own 3OWRenin 3.4.23.15 0.654