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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1b7y FYA Phenylalanine--tRNA ligase alpha subunit 6.1.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1b7y FYAPhenylalanine--tRNA ligase alpha subunit 6.1.1.20 1.209
2aly YSAPhenylalanine--tRNA ligase alpha subunit 6.1.1.20 0.745
1fyf SSAThreonine--tRNA ligase 6.1.1.3 0.729
3vqv ANPPyrrolysine--tRNA ligase / 0.729
4bwa N0BPyrrolysine--tRNA ligase / 0.716
3pzc GAPAmino acid--[acyl-carrier-protein] ligase 1 6.2.1.n2 0.695
2q7h YLYPyrrolysine--tRNA ligase / 0.690
1c0a AMOAspartate--tRNA ligase / 0.688
4bw9 ANPPyrrolysine--tRNA ligase / 0.676
3mey ATPAmino acid--[acyl-carrier-protein] ligase 1 6.2.1.n2 0.669
3e9h KAALysine--tRNA ligase 6.1.1.6 0.668
2i4m PSDProline--tRNA ligase 6.1.1.15 0.665
1nj6 A5AProline--tRNA ligase / 0.652
4h2u ATPAmino acid--[acyl-carrier-protein] ligase 1 6.2.1.n2 0.651