Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1b5t FAD 5,10-methylenetetrahydrofolate reductase 1.5.1.20

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1b5t FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.376
1zp3 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.294
3fsu FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.285
3fst FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.251
1zpt FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.172
2fmo FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.143
1zp4 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.097
1v93 FADMethylenetetrahydrofolate reductase / 1.069
1zrq FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 1.050
3apy FADMethylenetetrahydrofolate reductase / 0.979
3e2s FADBifunctional protein PutA 1.5.5.2 0.672
3gfz FMNUncharacterized protein / 0.666
2nli FMNLactate oxidase / 0.664
2q3r FMN12-oxophytodienoate reductase 1 1.3.1.42 0.653