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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1b3r NAD Adenosylhomocysteinase 3.3.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1b3r NADAdenosylhomocysteinase 3.3.1.1 0.991
3d64 NADAdenosylhomocysteinase / 0.890
1ky4 NADAdenosylhomocysteinase 3.3.1.1 0.862
3x2f NAIAdenosylhomocysteinase / 0.731
2dt5 NADRedox-sensing transcriptional repressor Rex / 0.707
1jki NAIInositol-3-phosphate synthase 5.5.1.4 0.700
3d4p NADL-lactate dehydrogenase 1 1.1.1.27 0.700
4k28 NADShikimate dehydrogenase family protein / 0.699
3qvs NADMyo-inositol-1-phosphate synthase (Ino1) / 0.698
1hld NADAlcohol dehydrogenase E chain 1.1.1.1 0.696
3qvt NAIMyo-inositol-1-phosphate synthase (Ino1) / 0.691
1o6z NADMalate dehydrogenase / 0.687
1pj3 NADNAD-dependent malic enzyme, mitochondrial 1.1.1.38 0.684
3doc NADGlyceraldehyde-3-phosphate dehydrogenase / 0.682
3h3j NADL-lactate dehydrogenase 1 1.1.1.27 0.682
4j49 NADUncharacterized protein / 0.682
1la2 NADInositol-3-phosphate synthase 5.5.1.4 0.681
4gkv NADAlcohol dehydrogenase, propanol-preferring 1.1.1.1 0.678
4jk3 NADUncharacterized protein / 0.677
1y7t NDPMalate dehydrogenase / 0.674
4w6z 8IDAlcohol dehydrogenase 1 1.1.1.1 0.674
1gd1 NADGlyceraldehyde-3-phosphate dehydrogenase / 0.673
1u7h NADPutative ornithine cyclodeaminase / 0.670
1hku NADC-terminal-binding protein 1 1.1.1 0.669
3cin NADMyo-inositol-1-phosphate synthase-related protein / 0.669
1efk NADNAD-dependent malic enzyme, mitochondrial 1.1.1.38 0.668
3x2e NAIAdenosylhomocysteinase / 0.666
4j43 NADUncharacterized protein / 0.666
3cif NADGlyceraldehyde-3-phosphate dehydrogenase / 0.665
3qvx NADMyo-inositol-1-phosphate synthase (Ino1) / 0.665
3wv8 ATPHmd co-occurring protein HcgE / 0.665
2dvm NAD439aa long hypothetical malate oxidoreductase (NAD) [malic enzyme] / 0.664
2ph5 NADHomospermidine synthase / 0.663
4i1i NADMalate dehydrogenase / 0.663
4j49 NAIUncharacterized protein / 0.663
3cmc NADGlyceraldehyde-3-phosphate dehydrogenase / 0.661
3oet NADErythronate-4-phosphate dehydrogenase / 0.661
3cps NADGlyceraldehyde-3-phosphate dehydrogenase / 0.660
1p1h NADInositol-3-phosphate synthase 5.5.1.4 0.659
2o4c NADErythronate-4-phosphate dehydrogenase / 0.659
1nqo NADGlyceraldehyde-3-phosphate dehydrogenase / 0.658
1bdm NAXMalate dehydrogenase / 0.657
3keo NADRedox-sensing transcriptional repressor Rex / 0.656
3n7u NADFormate dehydrogenase, chloroplastic/mitochondrial / 0.656
1uxj NADMalate dehydrogenase / 0.655
3rha FDAPutrescine oxidase / 0.655
2dfd NADMalate dehydrogenase, mitochondrial 1.1.1.37 0.654
3cos NADAlcohol dehydrogenase 4 1.1.1.1 0.653
4kug NAD3-hydroxybutyryl-CoA dehydrogenase / 0.653
4wct FADFructosyl amine:oxygen oxidoreductase / 0.653
4ros APRMalate dehydrogenase / 0.652
1lld NADL-lactate dehydrogenase 2 1.1.1.27 0.651
3ikt NADRedox-sensing transcriptional repressor Rex / 0.651
3qw2 NADMyo-inositol-1-phosphate synthase (Ino1) / 0.651
4xrg NADHomospermidine synthase 2.5.1.44 0.651
1efl NADNAD-dependent malic enzyme, mitochondrial 1.1.1.38 0.650
1pjc NADAlanine dehydrogenase / 0.650
2v7g NADUrocanate hydratase 4.2.1.49 0.650
3l4s NADGlyceraldehyde-3-phosphate dehydrogenase 1 / 0.650