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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1b2r FAD Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1b2r FADFerredoxin--NADP reductase 1.18.1.2 1.300
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.286
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.275
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.268
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 1.256
1h85 FADFerredoxin--NADP reductase 1.18.1.2 1.242
1qgy FADFerredoxin--NADP reductase 1.18.1.2 1.242
1bjk FADFerredoxin--NADP reductase 1.18.1.2 1.240
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.234
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.222
1que FADFerredoxin--NADP reductase 1.18.1.2 1.222
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.220
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.217
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.215
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.200
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 1.189
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.189
1w35 FADFerredoxin--NADP reductase 1.18.1.2 1.181
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.168
1qgz FADFerredoxin--NADP reductase 1.18.1.2 1.168
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.163
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.159
1gaw FADFerredoxin / 1.153
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.147
1w34 FADFerredoxin--NADP reductase 1.18.1.2 1.144
4bpr FADFerredoxin--NADP reductase 1.18.1.2 1.139
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.127
2vyq FADFerredoxin--NADP reductase 1.18.1.2 1.127
3vo2 FADFerredoxin--NADP reductase / 1.127
2b5o FADFerredoxin--NADP reductase 1.18.1.2 1.125
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.112
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.111
2rc6 FADFerredoxin--NADP reductase / 1.104
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.100
1gaq FADFerredoxin / 1.093
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 1.083
2rc5 FADFerredoxin--NADP reductase / 1.069
3w5u FADFerredoxin / 1.047
1sm4 FADFerredoxin--NADP reductase / 1.021
3qfs FADNADPH--cytochrome P450 reductase / 1.011
1f20 FADNitric oxide synthase, brain 1.14.13.39 1.002
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.002
4yaf FADNADPH--cytochrome P450 reductase / 0.996
1ewy FADFerredoxin--NADP reductase 1.18.1.2 0.966
3ojw FADNADPH--cytochrome P450 reductase / 0.964
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.954
1ja1 FADNADPH--cytochrome P450 reductase / 0.951
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.948
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.943
3qft FADNADPH--cytochrome P450 reductase / 0.938
3qfc FADNADPH--cytochrome P450 reductase / 0.929
1tll FADNitric oxide synthase, brain 1.14.13.39 0.923
4y9r FADNADPH--cytochrome P450 reductase / 0.923
4yau FADNADPH--cytochrome P450 reductase / 0.913
4y7c FADNADPH--cytochrome P450 reductase / 0.912
4y9u FADNADPH--cytochrome P450 reductase / 0.908
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.902
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.899
1ja0 FADNADPH--cytochrome P450 reductase / 0.895
3ojx FADNADPH--cytochrome P450 reductase / 0.879
3qfr FADNADPH--cytochrome P450 reductase / 0.866
1amo FADNADPH--cytochrome P450 reductase / 0.865
3qe2 FADNADPH--cytochrome P450 reductase / 0.855
1cqx FADFlavohemoprotein / 0.850
2bf4 FADNADPH--cytochrome P450 reductase / 0.849
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.848
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.841
4yao FADNADPH--cytochrome P450 reductase / 0.828
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.823
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.820
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.808
4wqm FADToluene-4-monooxygenase electron transfer component 1.18.1.3 0.808
1j9z FADNADPH--cytochrome P450 reductase / 0.793
3fpk FADFerredoxin-NADP reductase / 0.792
2pia FMNPhthalate dioxygenase reductase / 0.788
2eix FADNADH-cytochrome b5 reductase / 0.784
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.782
1fdr FADFerredoxin--NADP reductase 1.18.1.2 0.777
1gvh FADFlavohemoprotein / 0.776
2bn4 FADNADPH--cytochrome P450 reductase / 0.757
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.756
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.755
2gpj FADSiderophore-interacting protein / 0.745
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.743
1ep3 FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit / 0.729
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.713
2ptf FMNUncharacterized protein MTH_863 / 0.695
4k1x FADNADPH:ferredoxin reductase / 0.694
2bpo FADNADPH--cytochrome P450 reductase / 0.689
3q9t FAYUncharacterized protein / 0.679
2dji FADPyruvate oxidase / 0.677
2vnh FADNADPH:ferredoxin reductase / 0.675
4ees FMNPhototropin-2 2.7.11.1 0.675
2vnk FADNADPH:ferredoxin reductase / 0.673
2vnj FADNADPH:ferredoxin reductase / 0.671
2qdx FADFerredoxin--NADP+ reductase / 0.670
1ndh FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.666
4b4d FADFerredoxin-NADP reductase / 0.666
1pkv RBFRiboflavin synthase 2.5.1.9 0.664
1v5e FADPyruvate oxidase / 0.663
3e4v FMNUncharacterized protein / 0.663
2bgi FADNADPH:ferredoxin reductase / 0.660
2bgj FADNADPH:ferredoxin reductase / 0.658
1cnf FADNitrate reductase [NADH] 1.7.1.1 0.654
4a33 MYAGlycylpeptide N-tetradecanoyltransferase / 0.654
4hj6 FMNLOV protein / 0.654
4hsu FADLysine-specific histone demethylase 1B 1 0.650