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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1azl FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1azl FMNFlavodoxin / 1.193
1akr FMNFlavodoxin / 1.151
1akw FMNFlavodoxin / 1.119
1c7f FMNFlavodoxin / 1.079
1wsb FMNFlavodoxin / 1.073
2fx2 FMNFlavodoxin / 1.062
1j8q FMNFlavodoxin / 1.029
1aku FMNFlavodoxin / 1.026
3f6s FMNFlavodoxin / 1.025
1j9g FMNFlavodoxin / 1.019
1xyv FMNFlavodoxin / 1.018
1czn FMNFlavodoxin / 0.940
3esz FMNFlavodoxin / 0.929
1ofv FMNFlavodoxin / 0.927
5tgz FMNCannabinoid receptor 1 / 0.920
1xyy FMNFlavodoxin / 0.911
1ahn FMNFlavodoxin 1 / 0.910
3f6r FMNFlavodoxin / 0.907
2v5u FMNFlavodoxin / 0.899
4fx2 FMNFlavodoxin / 0.898
3f90 FMNFlavodoxin / 0.894
1fx1 FMNFlavodoxin / 0.866
3esy FMNFlavodoxin / 0.864
1yob FMNFlavodoxin 2 / 0.853
2v5v FMNFlavodoxin / 0.853
3kap FMNFlavodoxin / 0.847
2fcr FMNFlavodoxin / 0.826
2bf4 FMNNADPH--cytochrome P450 reductase / 0.822
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.818
4oxx FMNCindoxin / 0.792
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.769
5xra FMNCannabinoid receptor 1 / 0.769
1amo FMNNADPH--cytochrome P450 reductase / 0.766
2bn4 FMNNADPH--cytochrome P450 reductase / 0.766
2ohi FMNType A flavoprotein FprA 1 0.762
3n39 FMNProtein NrdI / 0.756
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.750
1bu5 RBFFlavodoxin / 0.749
3qe2 FMNNADPH--cytochrome P450 reductase / 0.747
4bmp FMNProtein NrdI / 0.747
4yao FMNNADPH--cytochrome P450 reductase / 0.747
1fue FMNFlavodoxin / 0.746
5fx2 FMNFlavodoxin / 0.744
5xr8 FMNCannabinoid receptor 1 / 0.744
4bmo FMNProtein NrdI / 0.743
2ohh FMNType A flavoprotein FprA 1 0.741
2ohj FMNType A flavoprotein FprA 1 0.737
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.737
1ja0 FMNNADPH--cytochrome P450 reductase / 0.726
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.719
3ojw FMNNADPH--cytochrome P450 reductase / 0.716
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.715
3qfr FMNNADPH--cytochrome P450 reductase / 0.713
3ojx FMNNADPH--cytochrome P450 reductase / 0.712
4y7c FMNNADPH--cytochrome P450 reductase / 0.708
1j9z FMNNADPH--cytochrome P450 reductase / 0.702
2mok FMNFlavodoxin 1 / 0.698
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.695
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.692
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.692
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.691
1ycg FMNNitric oxide reductase 1 0.689
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.688
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.677
3klb FMNUncharacterized protein / 0.675
2q9u FMNA-type flavoprotein / 0.670
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.670
4j8p FMNFlavodoxin / 0.669
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.669
2eba FADPutative glutaryl-CoA dehydrogenase / 0.666
3n3b FMNProtein NrdI / 0.666
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.665
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.665
3rpe FADPutative modulator of drug activity / 0.664
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.663
3in6 FMNUncharacterized protein / 0.663
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.662
2b3d FADModulator of drug activity B / 0.662
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.659
1t5b FMNFMN-dependent NADH-azoreductase / 0.657
3n3a FMNProtein NrdI / 0.656
3kaq FMNFlavodoxin / 0.654
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.650
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.650