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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ay0 TPP Transketolase 1 2.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ay0 TPPTransketolase 1 2.2.1.1 1.080
1ngs TPPTransketolase 1 2.2.1.1 0.935
1gpu THDTransketolase 1 2.2.1.1 0.855
3m34 TPPTransketolase / 0.851
1trk TPPTransketolase 1 2.2.1.1 0.846
3upt TPPTransketolase / 0.844
2r5n TPPTransketolase 1 / 0.839
1itz TPPTransketolase, chloroplastic 2.2.1.1 0.827
1tkb N1TTransketolase 1 2.2.1.1 0.826
2r8o T5XTransketolase 1 / 0.825
3rim TPPTransketolase 2.2.1.1 0.817
3m7i TPPTransketolase / 0.810
1tkc M6TTransketolase 1 2.2.1.1 0.796
3m6l TPPTransketolase / 0.791
1tka N3TTransketolase 1 2.2.1.1 0.784
2r8p T6FTransketolase 1 / 0.771
4c7x TPPTransketolase / 0.768
2g25 TDKPyruvate dehydrogenase E1 component 1.2.4.1 0.736
3dv0 TPWPyruvate dehydrogenase E1 component subunit alpha 1.2.4.1 0.736
3dv0 TPWPyruvate dehydrogenase E1 component subunit beta 1.2.4.1 0.736
4k9n TZDBenzoylformate decarboxylase 4.1.1.7 0.722
4mpr TPPBenzoylformate decarboxylase 4.1.1.7 0.708
2j9f THV2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial 1.2.4.4 0.707
2j9f THV2-oxoisovalerate dehydrogenase subunit beta, mitochondrial 1.2.4.4 0.707
4juc TPPBenzoylformate decarboxylase 4.1.1.7 0.707
4k9p TPPBenzoylformate decarboxylase 4.1.1.7 0.707
2q5q TPWIndole-3-pyruvate decarboxylase 4.1.1.74 0.706
4qel TZDBenzoylformate decarboxylase 4.1.1.7 0.706
5dgt TZDBenzoylformate decarboxylase 4.1.1.7 0.706
4mq5 TPPBenzoylformate decarboxylase 4.1.1.7 0.705
4mzx TZDBenzoylformate decarboxylase 4.1.1.7 0.705
1mcz TDPBenzoylformate decarboxylase 4.1.1.7 0.701
2q5o TPWIndole-3-pyruvate decarboxylase 4.1.1.74 0.700
2fwn TDPBenzoylformate decarboxylase 4.1.1.7 0.699
4ju8 TZDBenzoylformate decarboxylase 4.1.1.7 0.699
3lq4 TDPPyruvate dehydrogenase E1 component 1.2.4.1 0.697
4jub TPPBenzoylformate decarboxylase 4.1.1.7 0.697
2vk4 TPPPyruvate decarboxylase 4.1.1.1 0.695
1v11 TDP2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial 1.2.4.4 0.694
1y9d TPPPyruvate oxidase 1.2.3.3 0.693
3zhs TD6Multifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.691
1ovm TPPIndole-3-pyruvate decarboxylase 4.1.1.74 0.689
3fzn D7KBenzoylformate decarboxylase 4.1.1.7 0.687
4juf TPPBenzoylformate decarboxylase 4.1.1.7 0.687
4mpp TZDBenzoylformate decarboxylase 4.1.1.7 0.687
1po7 TZDBenzoylformate decarboxylase 4.1.1.7 0.686
1bfd TPPBenzoylformate decarboxylase 4.1.1.7 0.685
3fsj D7KBenzoylformate decarboxylase 4.1.1.7 0.685
5ahk TPPAcetolactate synthase II, large subunit / 0.684
1w88 TDPPyruvate dehydrogenase E1 component subunit alpha 1.2.4.1 0.683
1w88 TDPPyruvate dehydrogenase E1 component subunit beta 1.2.4.1 0.683
3zhv TDWMultifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.683
1ols TDP2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial 1.2.4.4 0.681
1l8a TDPPyruvate dehydrogenase E1 component 1.2.4.1 0.680
2o1x TDP1-deoxy-D-xylulose-5-phosphate synthase 2.2.1.7 0.679
3zhu TD8Multifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.678
4jd5 TZDBenzoylformate decarboxylase 4.1.1.7 0.676
1ni4 TPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial 1.2.4.1 0.675
1ni4 TPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial 1.2.4.1 0.675
2iea TDPPyruvate dehydrogenase E1 component 1.2.4.1 0.673
3zhq TPPMultifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.673
4gm4 TZDBenzoylformate decarboxylase 4.1.1.7 0.673
4k9o TPPBenzoylformate decarboxylase 4.1.1.7 0.673
3lq2 TDPPyruvate dehydrogenase E1 component 1.2.4.1 0.672
2w93 TPPPyruvate decarboxylase isozyme 1 / 0.669
3exh TPPPyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial 1.2.4.1 0.668
3exh TPPPyruvate dehydrogenase E1 component subunit beta, mitochondrial 1.2.4.1 0.668
4cok TPPPyruvate decarboxylase / 0.668
2vk8 TPPPyruvate decarboxylase isozyme 1 / 0.667
2qtc TDKPyruvate dehydrogenase E1 component 1.2.4.1 0.665
2v3w TPPBenzoylformate decarboxylase 4.1.1.7 0.665
3zht TD9Multifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.665
1rp7 TZDPyruvate dehydrogenase E1 component 1.2.4.1 0.664
3duf R1TPyruvate dehydrogenase E1 component subunit alpha 1.2.4.1 0.663
3duf R1TPyruvate dehydrogenase E1 component subunit beta 1.2.4.1 0.663
3ahe THDProbable phosphoketolase / 0.662
1pox TPPPyruvate oxidase 1.2.3.3 0.660
1pvd TPPPyruvate decarboxylase isozyme 1 / 0.658
2ihu TP9N(2)-(2-carboxyethyl)arginine synthase / 0.658
5ej5 TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.658
1umc TDP2-oxoisovalerate dehydrogenase subunit alpha 1.2.4.4 0.657
1umc TDP2-oxoisovalerate dehydrogenase subunit beta 1.2.4.4 0.657
3ahj TPPProbable phosphoketolase / 0.655
2o1s TDP1-deoxy-D-xylulose-5-phosphate synthase 2.2.1.7 0.654
3zhr TPPMultifunctional 2-oxoglutarate metabolism enzyme 1.2.4.2 0.654
5ej6 TD62-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 0.654
2ji6 TPWOxalyl-CoA decarboxylase 4.1.1.8 0.651