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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ats ADP Heat shock cognate 71 kDa protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ats ADPHeat shock cognate 71 kDa protein / 0.971
3hsc ADPHeat shock cognate 71 kDa protein / 0.882
1ngd ADPHeat shock cognate 71 kDa protein / 0.873
1ngb ADPHeat shock cognate 71 kDa protein / 0.866
1ngc ADPHeat shock cognate 71 kDa protein / 0.855
2qwl ADPHeat shock cognate 71 kDa protein / 0.849
1ngj ANPHeat shock cognate 71 kDa protein / 0.835
2qwn ADPHeat shock cognate 71 kDa protein / 0.828
1ngh ATPHeat shock cognate 71 kDa protein / 0.825
1nge ATPHeat shock cognate 71 kDa protein / 0.823
1ngi ANPHeat shock cognate 71 kDa protein / 0.819
5f2r ACP78 kDa glucose-regulated protein / 0.818
3fe1 ADPHeat shock 70 kDa protein 6 / 0.809
3ldo ANP78 kDa glucose-regulated protein / 0.787
2qwq ADPHeat shock cognate 71 kDa protein / 0.784
5f1x ATP78 kDa glucose-regulated protein / 0.771
1atr ADPHeat shock cognate 71 kDa protein / 0.764
2qwr ANPHeat shock cognate 71 kDa protein / 0.751
3ldl ATP78 kDa glucose-regulated protein / 0.751
4h5t ADPHeat shock cognate 71 kDa protein / 0.715
4k41 ATPActin, alpha skeletal muscle / 0.707
4b9q ATPChaperone protein DnaK / 0.704
3d2e ATPHeat shock protein homolog SSE1 / 0.703
3ule ATPActin-related protein 2 / 0.678
1yxq ATPActin, alpha skeletal muscle / 0.676
1nm1 ATPMajor actin / 0.662
3ffk ATPActin, alpha skeletal muscle / 0.659
4ci6 ATPActin / 0.655
4pkg ATPActin, alpha skeletal muscle / 0.655
4io8 3FDHeat shock 70 kDa protein 1B / 0.654
4cbx ATPActin-2 / 0.653