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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1aqu EST Estrogen sulfotransferase, testis isoform 2.8.2.4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1aqu ESTEstrogen sulfotransferase, testis isoform 2.8.2.4 0.903
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2yja ESTEstrogen receptor / 0.684
4pxm ESTEstrogen receptor / 0.683
5dxg ESTEstrogen receptor / 0.681
5dx3 ESTEstrogen receptor / 0.668
3uud ESTEstrogen receptor / 0.664
4e5l DBHPolymerase acidic protein / 0.660
2yat EEUEstrogen receptor / 0.656
3uzx AOM3-oxo-5-beta-steroid 4-dehydrogenase / 0.656
2j7x ESTEstrogen receptor beta / 0.651
4jvl ESTEstrogen sulfotransferase 2.8.2.4 0.651