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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ao0 5GP Amidophosphoribosyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ao0 5GPAmidophosphoribosyltransferase / 1.036
1ecb 5GPAmidophosphoribosyltransferase / 0.758
4d9f DCSD-cysteine desulfhydrase / 0.665
1j0d 5PA1-aminocyclopropane-1-carboxylate deaminase 3.5.99.7 0.657
1toj HCIAspartate aminotransferase 2.6.1.1 0.656
2prz OMPOrotate phosphoribosyltransferase 1 2.4.2.10 0.654
2zfa FMNLactate oxidase / 0.652
2nli FMNLactate oxidase / 0.651