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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ajx AH1 Gag-Pol polyprotein 3.4.23.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ajx AH1Gag-Pol polyprotein 3.4.23.16 1.291
1qbs DMPGag-Pol polyprotein 3.4.23.16 0.808
1pro A88Gag-Pol polyprotein / 0.802
1mes DMPGag-Pol polyprotein 3.4.23.16 0.797
1g35 AHFGag-Pol polyprotein 3.4.23.16 0.783
1bwb 146Gag-Pol polyprotein 3.4.23.16 0.778
1qbt 146Gag-Pol polyprotein 3.4.23.16 0.771
1t7k BH0Gag-Pol polyprotein 3.4.23.16 0.770
2a4f AAUV-1 protease / 0.766
1g2k NM1Gag-Pol polyprotein 3.4.23.16 0.764
2p3a 3TLPol protein / 0.759
1hvk A79Gag-Pol polyprotein / 0.743
2qi5 MZ7Gag-Pol polyprotein / 0.738
1ajv NMBGag-Pol polyprotein 3.4.23.16 0.737
1iiq 0ZRGag-Pol polyprotein 3.4.23.16 0.731
1bwa XV6Gag-Pol polyprotein 3.4.23.16 0.729
1qbu 846Gag-Pol polyprotein 3.4.23.16 0.729
3jvw DMPGag-Pol polyprotein 3.4.23.16 0.729
1mtr PI6Gag-Pol polyprotein 3.4.23.16 0.717
1ec1 BEEGag-Pol polyprotein 3.4.23.16 0.715
1sbg IM1Gag-Pol polyprotein / 0.713
2fxe DR7Gag-Pol polyprotein 3.4.23.16 0.711
1b6p PI7Gag-Pol polyprotein 3.4.23.16 0.708
2p3d 3TLProtease / 0.702
2fle AIProtease / 0.697
1hvl A76Gag-Pol polyprotein / 0.694
1z1r HBHGag-Pol polyprotein 3.4.23.16 0.693
2q63 1UNGag-Pol polyprotein 3.4.23.16 0.691
3sab F78Protease / 0.688
1d4y TPVGag-Pol polyprotein 3.4.23.16 0.687
4rvj 478Protease / 0.687
3bxr DRRGag-Pol polyprotein 3.4.23.16 0.686
3s54 017Protease / 0.683
1bv9 XV6Gag-Pol polyprotein 3.4.23.16 0.682
1w5y BE6Gag-Pol polyprotein 3.4.23.16 0.680
1b6k PI5Gag-Pol polyprotein 3.4.23.16 0.678
1d4i BEGGag-Pol polyprotein 3.4.23.16 0.677
1npa 3NHGag-Pol polyprotein 3.4.23.16 0.677
1npw LGZGag-Pol polyprotein 3.4.23.16 0.677
1ebz BECGag-Pol polyprotein 3.4.23.16 0.676
2q54 MU1Protease / 0.674
2r3t G4GGag-Pol polyprotein 3.4.23.16 0.671
1ebw BEIGag-Pol polyprotein 3.4.23.16 0.670
2aoe 0Q4Gag-Pol polyprotein 3.4.23.16 0.670
1ohr 1UNV-1 PROTEASE protein / 0.668
1mer DMQGag-Pol polyprotein 3.4.23.16 0.667
1odx 0E8Gag-Pol polyprotein 3.4.23.16 0.667
2qhc AB1Protease / 0.667
4k4p 3TLGag-Pol polyprotein / 0.667
1hvr XK2Gag-Pol polyprotein / 0.666
2bb9 AKCGag-Pol polyprotein 3.4.23.16 0.666
1hvi A77Protease / 0.665
1w5v BE3Gag-Pol polyprotein 3.4.23.16 0.665
3em6 017Gag-Pol polyprotein 3.4.23.16 0.664
2a1e IPFGag-Pol polyprotein 3.4.23.16 0.662
2qhy MZ1Gag-Pol polyprotein / 0.662
3qrs NK8Gag-Pol polyprotein 3.4.23.16 0.662
2f80 017Gag-Pol polyprotein 3.4.23.16 0.661
3sa4 F72Protease / 0.659
1a8k 0Q4Gag-Pol polyprotein 3.4.23.16 0.658
1sdv MK1Gag-Pol polyprotein 3.4.23.16 0.658
1hos PHPGag-Pol polyprotein / 0.657
1a94 0Q4Gag-Pol polyprotein 3.4.23.16 0.656
3st5 G89Gag-Pol polyprotein 3.4.23.16 0.656
1bdr IM1Gag-Pol polyprotein 3.4.23.16 0.655
3sa8 K83Protease / 0.654
1ec2 BEJGag-Pol polyprotein 3.4.23.16 0.653
1hii C20Gag-Pol polyprotein / 0.653
1siv PSIGag-Pol polyprotein / 0.653
3s85 LK0Gag-Pol polyprotein / 0.653
1dmp DMQGag-Pol polyprotein 3.4.23.16 0.651
3o9i A61Gag-Pol polyprotein / 0.650
3saa 77FProtease / 0.650
3slz 3TLPutative gag-pro-pol polyprotein / 0.650
4nju TPVProtease / 0.650