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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ahi CHO 7-alpha-hydroxysteroid dehydrogenase 1.1.1.159

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ahi CHO7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 1.099
1irj CPSProtein S100-A9 / 0.676
2rlc CHDCholoylglycine hydrolase 3.5.1.24 0.676
2azz TCHPhospholipase A2, major isoenzyme 3.1.1.4 0.657
1ot7 CHCBile acid receptor / 0.652
2b00 GCHPhospholipase A2, major isoenzyme 3.1.1.4 0.650