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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ahg TYR_PLP Aspartate aminotransferase 2.6.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ahg TYR_PLPAspartate aminotransferase 2.6.1.1 1.338
1arg PPDAspartate aminotransferase 2.6.1.1 1.036
1cq8 PY6Aspartate aminotransferase 2.6.1.1 1.018
1cq7 PY5Aspartate aminotransferase 2.6.1.1 1.001
4dbc 3QPAspartate aminotransferase 2.6.1.1 0.979
1maq PGUAspartate aminotransferase, mitochondrial 2.6.1.1 0.938
1x28 PGUAspartate aminotransferase 2.6.1.1 0.938
3qpg 3QPAspartate aminotransferase 2.6.1.1 0.874
1map KETAspartate aminotransferase, mitochondrial 2.6.1.1 0.844
1ivr CBAAspartate aminotransferase, mitochondrial 2.6.1.1 0.833
1cq6 PY4Aspartate aminotransferase 2.6.1.1 0.827
1akb PPDAspartate aminotransferase, mitochondrial 2.6.1.1 0.817
1akc PPEAspartate aminotransferase, mitochondrial 2.6.1.1 0.794
1arh PPDAspartate aminotransferase 2.6.1.1 0.790
4rkd KETAminotransferase / 0.762
4w5k PLPAspartate aminotransferase, mitochondrial / 0.753
4ge4 0KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.732
1cl2 PPGCystathionine beta-lyase MetC 4.4.1.8 0.728
4itx IN5Cystathionine beta-lyase MetC 4.4.1.8 0.716
3aej AA5Methionine gamma-lyase / 0.710
1toj HCIAspartate aminotransferase 2.6.1.1 0.696
3ei8 PL5LL-diaminopimelate aminotransferase, chloroplastic / 0.676
4wxg 2BOSerine hydroxymethyltransferase / 0.671
1dfo PLGSerine hydroxymethyltransferase 2.1.2.1 0.663
1oxo IK2Aspartate aminotransferase, mitochondrial 2.6.1.1 0.661
2fq6 P3FCystathionine beta-lyase MetC 4.4.1.8 0.657
4d96 5PAD-cysteine desulfhydrase / 0.657
1aka PLPAspartate aminotransferase, mitochondrial 2.6.1.1 0.654
4geb 0LDKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.653
4emy PLPAminotransferase class I and II / 0.651