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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ad5 ANP Tyrosine-protein kinase HCK 2.7.10.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ad5 ANPTyrosine-protein kinase HCK 2.7.10.2 0.869
1ir3 ANPInsulin receptor 2.7.10.1 0.696
3vs7 KS1Tyrosine-protein kinase HCK 2.7.10.2 0.677
1gtr ATPGlutamine--tRNA ligase 6.1.1.18 0.674
1qrt ATPGlutamine--tRNA ligase 6.1.1.18 0.673
1qrs ATPGlutamine--tRNA ligase 6.1.1.18 0.668
3lct ADPALK tyrosine kinase receptor 2.7.10.1 0.667
4jxx ATPGlutamine--tRNA ligase 6.1.1.18 0.664
4jxz ATPGlutamine--tRNA ligase 6.1.1.18 0.663
1jpa ANPEphrin type-B receptor 2 2.7.10.1 0.661
2oli IOPBasic phospholipase A2 VRV-PL-VIIIa 3.1.1.4 0.658
3a7h ATPSerine/threonine-protein kinase 24 2.7.11.1 0.658
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.658
4cki ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.658
3nyn SGVG protein-coupled receptor kinase 6 2.7.11.16 0.655
4jyz ATPGlutamine--tRNA ligase 6.1.1.18 0.655
2uw0 GVKcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.654
1c3x 8IGPurine nucleoside phosphorylase 2.4.2.1 0.653
2vwi ANPSerine/threonine-protein kinase OSR1 2.7.11.1 0.652
4fl3 ANPTyrosine-protein kinase SYK 2.7.10.2 0.651
1e1v CMGCyclin-dependent kinase 2 2.7.11.22 0.650
1h1p CMGCyclin-dependent kinase 2 2.7.11.22 0.650
1ztf XYARIO-type serine/threonine-protein kinase Rio1 2.7.11.1 0.650
4s34 ANPMitogen-activated protein kinase 1 2.7.11.24 0.650