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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1a50 FIP Tryptophan synthase alpha chain

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1a50 FIPTryptophan synthase alpha chain / 1.145
1fuy FIPTryptophan synthase alpha chain / 1.068
1a5s FIPTryptophan synthase alpha chain / 1.048
1kfc IPLTryptophan synthase alpha chain / 0.871
2trs IPLTryptophan synthase alpha chain / 0.788
1kfb IGPTryptophan synthase alpha chain / 0.767
2rh9 IGPTryptophan synthase alpha chain / 0.760
1qoq IGPTryptophan synthase alpha chain / 0.741
1beu IPLTryptophan synthase alpha chain / 0.720
2clh F19Tryptophan synthase alpha chain / 0.708
4xug F9FTryptophan synthase alpha chain / 0.678
3cas ASD3-oxo-5-beta-steroid 4-dehydrogenase / 0.650