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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1a42 BZU Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.987
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.850
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.824
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.824
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.815
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.802
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.781
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.778
1bnm AL8Carbonic anhydrase 2 4.2.1.1 0.768
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.762
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.757
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.749
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.745
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.744
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.740
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.737
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.728
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.725
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.722
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.720
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.716
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.714
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.713
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.709
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.709
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.708
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.706
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.705
3m5e JDRCarbonic anhydrase 2 4.2.1.1 0.703
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.702
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.697
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.697
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.695
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.694
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.693
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.693
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.693
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.692
4uov AZMCarbonate dehydratase / 0.692
4xiw AZMCarbonic anhydrase, alpha type / 0.689
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.688
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.687
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.685
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.685
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.682
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.682
3f7b AG5Carbonic anhydrase 4 4.2.1.1 0.681
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.679
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.676
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.676
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.676
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.675
1okn STBCarbonic anhydrase 2 4.2.1.1 0.672
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.672
1bzm MZMCarbonic anhydrase 1 4.2.1.1 0.671
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.668
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.667
3mho J43Carbonic anhydrase 2 4.2.1.1 0.667
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.666
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.664
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.664
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.662
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.661
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.657
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.657
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.657
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.652
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.650